It could have something to do with the numbering style option you chose in the Report Window; but my guess is that you need to run the Project/Utilities/Check/Repair options. Make sure to read up on it in your manual before you choose certain items. For instance, the REBUILD FOOTNOTES procedure overwrites any text you have typed directly into the FOotnote text field. You also do not want to run REPLACE MISSING EVENT?ROLE option if you have made changes to your Event and Source library files. Check Repair button after selectiong your options and the data will be checked and repaired, rather than having to go down the list (you get that if you click OK) and repairing each item itself.